PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000152.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 310aa    MW: 34710.4 Da    PI: 9.8658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000152.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-17102151255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++ GVr+++ +g+WvAeI+  +   ++ r +lg+f+taeeAa+a+++a+  l+g
  Itr_sc000152.1_g00021.1 102 KFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAAQAYDEAACLLRG 151
                              799******.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-36102165IPR001471AP2/ERF domain
PfamPF008476.5E-13102151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-27102158IPR001471AP2/ERF domain
PROSITE profilePS5103219.269102159IPR001471AP2/ERF domain
CDDcd000182.14E-31102158No hitNo description
SuperFamilySSF541719.81E-19102159IPR016177DNA-binding domain
PRINTSPR003678.9E-8103114IPR001471AP2/ERF domain
PRINTSPR003678.9E-8125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDIHLEKRRK GEGNGAANTK RKFAEPETTE THPPIYSPAK AIKQVKDLGF GVQPFKKRKS  60
RDPEFDNLET HPTIHSSPKT IPLGKGQVGA LGPGVQTVKK RKFVGVRQRP SGKWVAEIKN  120
TTQKIRMWLG TFDTAEEAAQ AYDEAACLLR GSNTRTNFLN PVPPNPALSL KIRNLLTQKQ  180
QNLNKTKTPN NLNKTPKPPT NPQTFPSQIL GDNNAYRPNF ILGELGYDHH PQTPLLTDFD  240
TFLVTQHQSS SSTYETRSLQ IPELEQMKVE RQICGGSVYG AINGVNEYWE NSLSDAFLDL  300
PMICQMFCPT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582086.15e-71PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S18e-45RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A068VAH91e-60A0A068VAH9_COFCA; Uncharacterized protein
STRINGSolyc01g005630.1.13e-57(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-32related to AP2 11